Thermo Fisher Proteome Discoverer
The ultimate toolbox for protein research.
Overview
Thermo Scientific Proteome Discoverer is a flexible, powerful software platform for the analysis of qualitative and quantitative proteomics data. It supports a wide range of workflows, from protein identification and post-translational modification (PTM) analysis to complex isobaric tagging and label-free quantitation. The software integrates multiple search algorithms and visualization tools to increase confidence in results.
✨ Key Features
- Protein identification and quantification
- Support for multiple search engines (SEQUEST, Mascot, etc.)
- Label-free (LFQ) and isobaric tag-based (TMT, iTRAQ) quantification
- Post-Translational Modification (PTM) analysis
- Customizable node-based workflow editor
- Interactive data visualization tools
- Statistical analysis (FDR calculation)
🎯 Key Differentiators
- Seamless integration with Thermo Fisher Orbitrap mass spectrometers.
- Flexible, visual workflow builder.
- Support for multiple, integrated search algorithms and AI-powered rescoring.
Unique Value: Provides a comprehensive and extensible platform to extract the maximum amount of information from proteomics mass spectrometry data with high confidence.
🎯 Use Cases (5)
✅ Best For
- Widely cited in peer-reviewed publications for proteomics data analysis.
- Standard software in core facilities equipped with Thermo Fisher mass spectrometers.
💡 Check With Vendor
Verify these considerations match your specific requirements:
- Genomic sequence analysis
- Electronic Lab Notebook (ELN)
- Molecular visualization (PDB files)
🏆 Alternatives
Offers a more user-friendly, workflow-based approach compared to free alternatives like MaxQuant, and tighter hardware integration than other commercial tools.
💻 Platforms
✅ Offline Mode Available
🔌 Integrations
🛟 Support Options
- ✓ Email Support
- ✓ Phone Support
- ✓ Dedicated Support (Varies with service contract tier)
💰 Pricing
✓ 60-day free trial
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